FEATURES

ECOTOXCHIP ANALYSIS

Directly analyze EcoToxChip results here to guide decision-making for several ecological species and use cases.

INTERACTIVE EXPLORATION

Generate common statistical plots (e.g., volcano plots or heatmaps) or use novel tools (e.g., EcoToxBMD, EcoToxMods) to analyze toxicogenomics data

SEVERAL DATA INPUTS

Start analysis using many types of inputs including RNAseq, microarray, or qPCR.

RAW RNA-seq DATA

Universal platform for processing RNA-seq from any species (model or non-model)

REPORT GENERATION

Summarize all executed analysis steps into a comprehensive report for proper documentation.

PROJECT MANAGEMENT

Create a user account to store your data and results, as well as resume your analysis.



News & Updates

  • Please reach us through our OmicsForum to ask questions or request features regarding EcoToxXplorer;
  • Upgraded to PrimeFaces 14.0.4, and Jakarta EE 10 (09/16/2023);
  • Interface updates and minor fixes based on user feedback (06/05/2024);
  • Upgraded to PrimeFaces 13.0.1, Java 17 and R 4.3.2 (12/20/2023);
  • Added support for TMM normalization option and interface enhancement (12/12/2023);
  • Updated housekeeping gene status for e2f1 in rainbow trout (05/23/2023);
  • Added support for three new species (double-crested cormorant, rainbow trout, and northern leopard frog) for EcoToxChip analysis (05/02/2023);
  • Upgraded the web framework to PrimeFaces 12.0.0 (11/03/2022);
  • Fixed a bug when doing DR with single replicate (05/27/2022);
  • Various feature enhancements and code refactoring based on user feedback (05/23/2022);
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Publications

ACKNOWLEDGEMENTS